ENSACLP00000003640 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000003640

Transmembrane protein 175. (502 aa)

Predicted Functional Partners:

lamp1

0.887

LOC113007997

0.792

DGKQ

0.716

TVP23A

0.672

LOC113010303

0.655

atp13a2

0.655

tmem275

0.655

PCGF3

0.638

SAMD5

0.547

DDRGK1

0.524

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DDRGK1	ENSACLP00000003640	ENSACLP00000010990	ENSACLP00000003640	DDRGK domain containing 1.	Transmembrane protein 175.	0.524
DGKQ	ENSACLP00000003640	ENSACLP00000024120	ENSACLP00000003640	Diacylglycerol kinase.	Transmembrane protein 175.	0.716
DGKQ	PCGF3	ENSACLP00000024120	ENSACLP00000022003	Diacylglycerol kinase.	Polycomb group ring finger 3.	0.589
ENSACLP00000003640	DDRGK1	ENSACLP00000003640	ENSACLP00000010990	Transmembrane protein 175.	DDRGK domain containing 1.	0.524
ENSACLP00000003640	DGKQ	ENSACLP00000003640	ENSACLP00000024120	Transmembrane protein 175.	Diacylglycerol kinase.	0.716
ENSACLP00000003640	LOC113007997	ENSACLP00000003640	ENSACLP00000002695	Transmembrane protein 175.	Lysosomal associated membrane protein 1b.	0.792
ENSACLP00000003640	LOC113010303	ENSACLP00000003640	ENSACLP00000003997	Transmembrane protein 175.	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.	0.655
ENSACLP00000003640	PCGF3	ENSACLP00000003640	ENSACLP00000022003	Transmembrane protein 175.	Polycomb group ring finger 3.	0.638
ENSACLP00000003640	SAMD5	ENSACLP00000003640	ENSACLP00000025425	Transmembrane protein 175.	Sterile alpha motif domain containing 5.	0.547
ENSACLP00000003640	TVP23A	ENSACLP00000003640	ENSACLP00000040940	Transmembrane protein 175.	Golgi apparatus membrane protein TVP23 homolog.	0.672
ENSACLP00000003640	atp13a2	ENSACLP00000003640	ENSACLP00000021589	Transmembrane protein 175.	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.	0.655
ENSACLP00000003640	lamp1	ENSACLP00000003640	ENSACLP00000035338	Transmembrane protein 175.	Lysosomal associated membrane protein 1a.	0.887
ENSACLP00000003640	tmem275	ENSACLP00000003640	ENSACLP00000034276	Transmembrane protein 175.	Transmembrane protein 275.	0.655
LOC113007997	ENSACLP00000003640	ENSACLP00000002695	ENSACLP00000003640	Lysosomal associated membrane protein 1b.	Transmembrane protein 175.	0.792
LOC113007997	lamp1	ENSACLP00000002695	ENSACLP00000035338	Lysosomal associated membrane protein 1b.	Lysosomal associated membrane protein 1a.	0.872
LOC113010303	ENSACLP00000003640	ENSACLP00000003997	ENSACLP00000003640	Cation-transporting ATPase; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type V subfamily.	Transmembrane protein 175.	0.655
PCGF3	DGKQ	ENSACLP00000022003	ENSACLP00000024120	Polycomb group ring finger 3.	Diacylglycerol kinase.	0.589
PCGF3	ENSACLP00000003640	ENSACLP00000022003	ENSACLP00000003640	Polycomb group ring finger 3.	Transmembrane protein 175.	0.638
SAMD5	ENSACLP00000003640	ENSACLP00000025425	ENSACLP00000003640	Sterile alpha motif domain containing 5.	Transmembrane protein 175.	0.547
TVP23A	ENSACLP00000003640	ENSACLP00000040940	ENSACLP00000003640	Golgi apparatus membrane protein TVP23 homolog.	Transmembrane protein 175.	0.672