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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf111Ring finger protein 111. (1006 aa)    
Predicted Functional Partners:
RPS27A
Ribosomal protein S27a.
    
 0.885
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.885
ENSACLP00000009605
Ubiquitin B.
    
  0.823
LOC113030103
Uncharacterized protein.
    
  0.823
smad7
Mothers against decapentaplegic homolog.
   
 0.798
smad6
Mothers against decapentaplegic homolog.
   
 0.788
LOC113019522
Mothers against decapentaplegic homolog.
   
 0.788
ube2v2
Ubiquitin-conjugating enzyme E2 variant 2.
   
 0.755
sumo1
Small ubiquitin-related modifier.
   
 0.749
cdc23
CDC23 (cell division cycle 23, yeast, homolog).
    
  0.721
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.