Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rnf111Ring finger protein 111. (1006 aa)    
Predicted Functional Partners:
sumo1
Small ubiquitin-related modifier.
    
 0.873
LOC113009238
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.851
LOC113026979
Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.851
smad7
Mothers against decapentaplegic homolog.
   
 0.844
smad6
Mothers against decapentaplegic homolog.
   
 0.844
LOC113019522
Mothers against decapentaplegic homolog.
   
 0.844
ENSACLP00000028325
Cell division cycle 26 homolog.
     
 0.800
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.792
RPS27A
Ribosomal protein S27a.
    
 0.788
cdc23
CDC23 (cell division cycle 23, yeast, homolog).
    
  0.787
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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