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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BPTFBromodomain PHD finger transcription factor. (2543 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 
 0.927
ENSACLP00000011108
Helicase, lymphoid specific.
   
 
 0.817
ENSACLP00000028584
Chromodomain helicase DNA binding protein 1-like.
   
 
 0.817
ENSACLP00000034236
Remodeling and spacing factor 1b, tandem duplicate 1.
   
 
 0.800
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
   0.796
phf3
PHD finger protein 3.
   
   
0.782
LOC113027513
Retinoblastoma binding protein 4, like.
    
 
 0.779
LOC113011815
Retinoblastoma binding protein 4.
    
 
 0.779
LOC113014472
WD_REPEATS_REGION domain-containing protein.
    
 
 0.779
ENSACLP00000020708
Nipped-B protein.
   
    0.764
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.