Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BPTFBromodomain PHD finger transcription factor. (2543 aa)    
Predicted Functional Partners:
smarca5
SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5.
   
 0.964
c10h17orf49
Zgc:103508.
    
 0.926
ENSACLP00000028064
HMG box domain containing 4a.
    
   0.900
LOC113018351
Uncharacterized protein.
    
 0.880
ENSACLP00000034236
Remodeling and spacing factor 1b, tandem duplicate 1.
   
 
 0.880
dpy30
Dpy-30 histone methyltransferase complex regulatory subunit.
    
 
 0.855
LOC113027513
Retinoblastoma binding protein 4, like.
    
 
 0.833
LOC113011815
Retinoblastoma binding protein 4.
    
 
 0.833
LOC113014472
WD_REPEATS_REGION domain-containing protein.
    
 
 0.833
TFAP4
Transcription factor AP-4.
    
 
 0.833
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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