close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113016001RRM domain-containing protein. (334 aa)    
Predicted Functional Partners:
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.786
ENSACLP00000040931
Ubiquitin-like modifier activating enzyme 5.
    
   0.786
LOC113020183
RRM domain-containing protein.
  
 
 0.781
LOC113028211
Serine and arginine rich splicing factor 2a.
  
 
 0.765
sf3b1
Splicing factor 3b, subunit 1.
   
 0.724
ENSACLP00000035671
Cell division cycle 20 homolog.
   
 
 0.714
ENSACLP00000038411
Cell division cycle 20 homolog.
   
 
 0.714
ENSACLP00000018777
Cytoplasmic polyadenylation element binding protein 1b.
   
 
 0.713
sf3b2
Splicing factor 3b, subunit 2.
   
 0.708
MSI1
Musashi RNA binding protein 1.
  
 
 0.697
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.