Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC113016001RRM domain-containing protein. (334 aa)    
Predicted Functional Partners:
ENSACLP00000040931
Ubiquitin-like modifier activating enzyme 5.
    
   0.974
ENSACLP00000035671
Cell division cycle 20 homolog.
    
 
 0.862
ENSACLP00000038411
Cell division cycle 20 homolog.
    
 
 0.862
cnot7
CCR4-NOT transcription complex, subunit 7.
    
 0.767
cnot8
CCR4-NOT transcription complex, subunit 8.
    
 0.767
ENSACLP00000020295
Small EDRK-rich factor 2.
    
   0.757
nelfcd
Negative elongation factor complex member C/D.
    
 0.755
LOC113024088
RNA binding fox-1 homolog 2.
   
 0.738
LOC113021216
RRM domain-containing protein.
   
 0.738
LOC113031831
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
0.729
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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