STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ttc25Tetratricopeptide repeat domain 25. (490 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.926
ENSACLP00000016170
Armadillo repeat containing 4.
  
 
 0.914
ENSACLP00000023325
Coiled-coil domain containing 114.
   
 
 0.894
ENSACLP00000029276
Uncharacterized protein.
   
 0.892
ak9
Adenylate kinase 9.
   
 0.841
tekt3
Tektin 3.
   
 
 0.834
LOC113023509
Uncharacterized protein.
  
 
 0.823
ENSACLP00000022861
Coiled-coil domain containing 151.
  
 
 0.823
cfap52
Cilia and flagella associated protein 52.
   
 0.812
armc3
Armadillo repeat containing 3.
   
 
 0.808
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.