STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003702Golgi glycoprotein 1a. (1199 aa)    
Predicted Functional Partners:
LOC113013457
Golgi glycoprotein 1b.
  
  
 
0.829
LOC113015921
Selectin P.
    
 0.706
ENSACLP00000037026
Uncharacterized protein.
    
 0.706
ENSACLP00000037114
Uncharacterized protein.
    
 0.706
ENSACLP00000037295
Uncharacterized protein.
    
 0.706
fam234b
Family with sequence similarity 234 member B.
      
 0.489
aplp2
Amyloid beta (A4) precursor-like protein 2.
   
  
 0.472
ENSACLP00000036507
G patch domain containing 1.
      
 0.467
ENSACLP00000001532
Zgc:153240.
      
 0.414
rfwd3
Ring finger and WD repeat domain 3.
    
 
 0.412
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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