ENSACLP00000003707 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000003707

Uncharacterized protein. (79 aa)

Predicted Functional Partners:

sod2

0.765

gsr

0.744

sod1

0.688

sod3

0.688

prdx5

0.685

gsto1

0.651

LOC113016125

0.646

PRDX6

0.646

txnrd2

0.622

LOC113022981

0.622

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003707	LOC113016125	ENSACLP00000003707	ENSACLP00000018178	Uncharacterized protein.	Peroxiredoxin 6.	0.646
ENSACLP00000003707	LOC113022981	ENSACLP00000003707	ENSACLP00000036249	Uncharacterized protein.	Thioredoxin reductase 3.	0.622
ENSACLP00000003707	PRDX6	ENSACLP00000003707	ENSACLP00000020759	Uncharacterized protein.	Peroxiredoxin 6.	0.646
ENSACLP00000003707	gsr	ENSACLP00000003707	ENSACLP00000005398	Uncharacterized protein.	Glutathione reductase.	0.744
ENSACLP00000003707	gsto1	ENSACLP00000003707	ENSACLP00000007399	Uncharacterized protein.	Glutathione S-transferase omega 2; Belongs to the GST superfamily.	0.651
ENSACLP00000003707	prdx5	ENSACLP00000003707	ENSACLP00000013956	Uncharacterized protein.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.685
ENSACLP00000003707	sod1	ENSACLP00000003707	ENSACLP00000002916	Uncharacterized protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.688
ENSACLP00000003707	sod2	ENSACLP00000003707	ENSACLP00000030837	Uncharacterized protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.765
ENSACLP00000003707	sod3	ENSACLP00000003707	ENSACLP00000028504	Uncharacterized protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.688
ENSACLP00000003707	txnrd2	ENSACLP00000003707	ENSACLP00000006187	Uncharacterized protein.	Thioredoxin reductase 2, tandem duplicate 1.	0.622
LOC113016125	ENSACLP00000003707	ENSACLP00000018178	ENSACLP00000003707	Peroxiredoxin 6.	Uncharacterized protein.	0.646
LOC113016125	LOC113022981	ENSACLP00000018178	ENSACLP00000036249	Peroxiredoxin 6.	Thioredoxin reductase 3.	0.613
LOC113016125	gsr	ENSACLP00000018178	ENSACLP00000005398	Peroxiredoxin 6.	Glutathione reductase.	0.939
LOC113016125	gsto1	ENSACLP00000018178	ENSACLP00000007399	Peroxiredoxin 6.	Glutathione S-transferase omega 2; Belongs to the GST superfamily.	0.946
LOC113016125	prdx5	ENSACLP00000018178	ENSACLP00000013956	Peroxiredoxin 6.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.892
LOC113016125	sod1	ENSACLP00000018178	ENSACLP00000002916	Peroxiredoxin 6.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.731
LOC113016125	sod2	ENSACLP00000018178	ENSACLP00000030837	Peroxiredoxin 6.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.828
LOC113016125	sod3	ENSACLP00000018178	ENSACLP00000028504	Peroxiredoxin 6.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.731
LOC113016125	txnrd2	ENSACLP00000018178	ENSACLP00000006187	Peroxiredoxin 6.	Thioredoxin reductase 2, tandem duplicate 1.	0.613
LOC113022981	ENSACLP00000003707	ENSACLP00000036249	ENSACLP00000003707	Thioredoxin reductase 3.	Uncharacterized protein.	0.622