ENSACLP00000003707 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000003707

Uncharacterized protein. (79 aa)

Predicted Functional Partners:

sod2

0.790

sod1

0.741

sod3

0.741

prdx5

0.725

gsr

0.709

LOC113016125

0.686

PRDX6

0.686

txnrd2

0.676

LOC113022981

0.676

glrx

0.658

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003707	LOC113016125	ENSACLP00000003707	ENSACLP00000018178	Uncharacterized protein.	Peroxiredoxin 6.	0.686
ENSACLP00000003707	LOC113022981	ENSACLP00000003707	ENSACLP00000036249	Uncharacterized protein.	Thioredoxin reductase 3.	0.676
ENSACLP00000003707	PRDX6	ENSACLP00000003707	ENSACLP00000020759	Uncharacterized protein.	Peroxiredoxin 6.	0.686
ENSACLP00000003707	glrx	ENSACLP00000003707	ENSACLP00000018258	Uncharacterized protein.	Glutaredoxin (thioltransferase).	0.658
ENSACLP00000003707	gsr	ENSACLP00000003707	ENSACLP00000005398	Uncharacterized protein.	Glutathione reductase.	0.709
ENSACLP00000003707	prdx5	ENSACLP00000003707	ENSACLP00000013956	Uncharacterized protein.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.725
ENSACLP00000003707	sod1	ENSACLP00000003707	ENSACLP00000002916	Uncharacterized protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.741
ENSACLP00000003707	sod2	ENSACLP00000003707	ENSACLP00000030837	Uncharacterized protein.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.790
ENSACLP00000003707	sod3	ENSACLP00000003707	ENSACLP00000028504	Uncharacterized protein.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.741
ENSACLP00000003707	txnrd2	ENSACLP00000003707	ENSACLP00000006187	Uncharacterized protein.	Thioredoxin reductase 2, tandem duplicate 1.	0.676
LOC113016125	ENSACLP00000003707	ENSACLP00000018178	ENSACLP00000003707	Peroxiredoxin 6.	Uncharacterized protein.	0.686
LOC113016125	LOC113022981	ENSACLP00000018178	ENSACLP00000036249	Peroxiredoxin 6.	Thioredoxin reductase 3.	0.663
LOC113016125	PRDX6	ENSACLP00000018178	ENSACLP00000020759	Peroxiredoxin 6.	Peroxiredoxin 6.	0.830
LOC113016125	glrx	ENSACLP00000018178	ENSACLP00000018258	Peroxiredoxin 6.	Glutaredoxin (thioltransferase).	0.495
LOC113016125	gsr	ENSACLP00000018178	ENSACLP00000005398	Peroxiredoxin 6.	Glutathione reductase.	0.914
LOC113016125	prdx5	ENSACLP00000018178	ENSACLP00000013956	Peroxiredoxin 6.	Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. Prx5 subfamily.	0.911
LOC113016125	sod1	ENSACLP00000018178	ENSACLP00000002916	Peroxiredoxin 6.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.674
LOC113016125	sod2	ENSACLP00000018178	ENSACLP00000030837	Peroxiredoxin 6.	Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.	0.855
LOC113016125	sod3	ENSACLP00000018178	ENSACLP00000028504	Peroxiredoxin 6.	Superoxide dismutase [Cu-Zn]; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.	0.674
LOC113016125	txnrd2	ENSACLP00000018178	ENSACLP00000006187	Peroxiredoxin 6.	Thioredoxin reductase 2, tandem duplicate 1.	0.663