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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113007480Cytochrome C oxidase assembly factor 5. (75 aa)    
Predicted Functional Partners:
LOC113007747
Cytochrome c oxidase copper chaperone COX17.
   
  
 0.832
ENSACLP00000015460
Mitochondrial ribosomal protein S18C.
   
  
 0.773
polr2l
Polymerase (RNA) II (DNA directed) polypeptide L.
   
   0.686
ENSACLP00000027442
COX assembly mitochondrial protein.
   
  
 0.682
mrpl51
Mitochondrial ribosomal protein L51.
   
  
 0.671
mrps33
Mitochondrial ribosomal protein S33.
   
    0.663
ENSACLP00000024613
zf-Tim10_DDP domain-containing protein.
   
  
 0.657
gfer
Sulfhydryl oxidase.
   
  
 0.652
TOMM7
Translocase of outer mitochondrial membrane 7.
   
  
 0.648
ENSACLP00000032040
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
   
  
 0.630
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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