Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113007480Cytochrome C oxidase assembly factor 5. (75 aa)    
Predicted Functional Partners:
LOC113027660
Cytochrome c oxidase assembly factor COX19.
   
 
 0.964
LOC113028158
Cytochrome C oxidase assembly factor 3a.
   
 
 0.962
LOC113007747
Cytochrome c oxidase copper chaperone COX17.
   
 
 0.943
LOC113035339
Cytochrome c oxidase assembly homolog 15 (yeast).
     
 0.939
LOC113011710
Cytochrome c oxidase assembly factor COX16.
   
 
 0.931
ENSACLP00000027442
COX assembly mitochondrial protein.
   
 
 0.889
LOC113028096
Cytochrome c oxidase assembly homolog 11 (yeast).
   
 
 0.833
ENSACLP00000010041
Cytochrome C oxidase assembly factor 3b.
   
 
 0.813
ENSACLP00000032040
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
   
  
 0.812
mrpl51
Mitochondrial ribosomal protein L51.
   
  
 0.791
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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