STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113013265Procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1a. (730 aa)    
Predicted Functional Partners:
LOC113020579
Collagen beta(1-O)galactosyltransferase 1.
   
0.900
colgalt2
Collagen beta(1-O)galactosyltransferase 2.
   
0.900
ENSACLP00000033139
Cerebral endothelial cell adhesion molecule.
   
0.900
ENSACLP00000036150
Uncharacterized protein.
   
0.900
suv39h1
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
    
  0.843
SMYD3
SET and MYND domain containing 3.
   
 0.843
LOC113030042
Nuclear receptor binding SET domain protein 1b.
    
 0.841
ENSACLP00000008367
SET domain containing 7, histone lysine methyltransferase.
    
 0.839
nsd3
Nuclear receptor binding SET domain protein 3.
    
 0.839
nsd2
Nuclear receptor binding SET domain protein 2.
    
 0.839
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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