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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003770TNFAIP3 interacting protein 1. (652 aa)    
Predicted Functional Partners:
tnfaip3
Tumor necrosis factor, alpha-induced protein 3.
   
 0.981
LOC113031642
Tumor necrosis factor b (TNF superfamily, member 2).
    
 
 0.959
LOC113032516
Tumor necrosis factor receptor superfamily, member 1a.
    
 
 0.949
optn
Optineurin.
    
 0.911
ENSACLP00000009605
Ubiquitin B.
    
   0.850
LOC113030103
Uncharacterized protein.
    
   0.850
LOC113013036
Inhibitor of nuclear factor kappa B kinase regulatory subunit gamma.
    
 0.815
zranb1
Zinc finger, RAN-binding domain containing 1a.
    
 0.794
otud7b
OTU deubiquitinase 7B.
    
 0.794
ZRANB1
Zinc finger RANBP2-type containing 1.
    
 0.794
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.