STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003775Ig-like domain-containing protein. (294 aa)    
Predicted Functional Partners:
fancm
Uncharacterized protein.
    
 0.610
LOC113035776
Olfactory marker protein a.
      
 0.601
ENSACLP00000017593
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.566
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.563
ENSACLP00000010605
DNA polymerase.
    
 0.562
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
    
 0.522
ENSACLP00000024524
NADH:ubiquinone oxidoreductase subunit A6; Belongs to the complex I LYR family.
   
  0.521
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
    
  0.517
ndufv2
NADH:ubiquinone oxidoreductase core subunit V2.
    
  0.515
ndufa9
NADH:ubiquinone oxidoreductase subunit A9a.
    
  0.515
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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