ENSACLP00000003776 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000003776

Uncharacterized protein. (280 aa)

Predicted Functional Partners:

phc3

0.885

RING1

0.798

ENSACLP00000033001

0.798

pcgf2

0.789

bmi1

0.789

ENSACLP00000001277

0.787

phc1

0.781

LOC113023624

0.774

LOC113020834

0.774

cbx6

0.756

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000001277	ENSACLP00000003776	ENSACLP00000001277	ENSACLP00000003776	Uncharacterized protein.	Uncharacterized protein.	0.787
ENSACLP00000001277	ENSACLP00000033001	ENSACLP00000001277	ENSACLP00000033001	Uncharacterized protein.	Ring finger protein 2.	0.850
ENSACLP00000001277	LOC113020834	ENSACLP00000001277	ENSACLP00000041499	Uncharacterized protein.	Chromobox homolog 4 (Pc class homolog, Drosophila).	0.796
ENSACLP00000001277	LOC113023624	ENSACLP00000001277	ENSACLP00000015556	Uncharacterized protein.	Chromobox 4.	0.796
ENSACLP00000001277	RING1	ENSACLP00000001277	ENSACLP00000016122	Uncharacterized protein.	Ring finger protein 1.	0.850
ENSACLP00000001277	bmi1	ENSACLP00000001277	ENSACLP00000032659	Uncharacterized protein.	Bmi1 polycomb ring finger oncogene 1a.	0.851
ENSACLP00000001277	cbx6	ENSACLP00000001277	ENSACLP00000011190	Uncharacterized protein.	Chromo domain-containing protein.	0.830
ENSACLP00000001277	pcgf2	ENSACLP00000001277	ENSACLP00000013603	Uncharacterized protein.	Polycomb group ring finger 2.	0.851
ENSACLP00000001277	phc1	ENSACLP00000001277	ENSACLP00000034440	Uncharacterized protein.	Uncharacterized protein.	0.553
ENSACLP00000001277	phc3	ENSACLP00000001277	ENSACLP00000016591	Uncharacterized protein.	Uncharacterized protein.	0.540
ENSACLP00000003776	ENSACLP00000001277	ENSACLP00000003776	ENSACLP00000001277	Uncharacterized protein.	Uncharacterized protein.	0.787
ENSACLP00000003776	ENSACLP00000033001	ENSACLP00000003776	ENSACLP00000033001	Uncharacterized protein.	Ring finger protein 2.	0.798
ENSACLP00000003776	LOC113020834	ENSACLP00000003776	ENSACLP00000041499	Uncharacterized protein.	Chromobox homolog 4 (Pc class homolog, Drosophila).	0.774
ENSACLP00000003776	LOC113023624	ENSACLP00000003776	ENSACLP00000015556	Uncharacterized protein.	Chromobox 4.	0.774
ENSACLP00000003776	RING1	ENSACLP00000003776	ENSACLP00000016122	Uncharacterized protein.	Ring finger protein 1.	0.798
ENSACLP00000003776	bmi1	ENSACLP00000003776	ENSACLP00000032659	Uncharacterized protein.	Bmi1 polycomb ring finger oncogene 1a.	0.789
ENSACLP00000003776	cbx6	ENSACLP00000003776	ENSACLP00000011190	Uncharacterized protein.	Chromo domain-containing protein.	0.756
ENSACLP00000003776	pcgf2	ENSACLP00000003776	ENSACLP00000013603	Uncharacterized protein.	Polycomb group ring finger 2.	0.789
ENSACLP00000003776	phc1	ENSACLP00000003776	ENSACLP00000034440	Uncharacterized protein.	Uncharacterized protein.	0.781
ENSACLP00000003776	phc3	ENSACLP00000003776	ENSACLP00000016591	Uncharacterized protein.	Uncharacterized protein.	0.885