Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003838Uncharacterized protein. (264 aa)    
Predicted Functional Partners:
ENSACLP00000023416
Uncharacterized protein.
   
 0.945
ENSACLP00000029196
PWI domain-containing protein.
   
 0.945
sf3b1
Splicing factor 3b, subunit 1.
   
 
 0.921
prpf4b
Pre-mRNA processing factor 4Bb.
   
  0.917
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
   
 0.914
wac
WW domain containing adaptor with coiled-coil a.
   
 0.904
LOC113010114
WW domain-containing protein.
   
 0.904
TCERG1
Transcription elongation regulator 1.
   
 
  0.873
NCBP1
Nuclear cap binding protein subunit 1.
   
 
 0.872
luc7l3
LUC7-like 3 pre-mRNA splicing factor.
   
 0.853
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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