STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003842Uncharacterized protein. (296 aa)    
Predicted Functional Partners:
ENSACLP00000035971
SH2 domain containing 1A duplicate b.
   
 0.674
LOC113029495
SH2 domain-containing protein.
   
 0.649
fancm
Uncharacterized protein.
    
 0.610
ENSACLP00000017593
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.566
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.563
ENSACLP00000010605
DNA polymerase.
    
 0.562
ENSACLP00000000548
Ig-like domain-containing protein.
   
 0.546
ENSACLP00000004306
Ig-like domain-containing protein.
   
 0.546
ENSACLP00000004336
Ig-like domain-containing protein.
   
 0.546
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
    
 0.522
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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