STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
phf3PHD finger protein 3. (1700 aa)    
Predicted Functional Partners:
ENSACLP00000020708
Nipped-B protein.
   
 
 0.914
ENSACLP00000028272
Nipped-B protein.
   
 
 0.914
polr2a
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.908
ENSACLP00000035168
Uncharacterized protein.
   
 0.906
LOC113024484
Peptidyl-prolyl cis-trans isomerase.
    
 
 0.892
ENSACLP00000016700
Transcription elongation factor SPT5.
    
  0.885
POLR2E
RNA polymerase II subunit E.
    
  0.884
SETD2
SET domain containing 2, histone lysine methyltransferase.
   
  
 0.866
USP34
Ubiquitin specific peptidase 34; Belongs to the peptidase C19 family.
   
 
  0.831
ENSACLP00000020732
Uncharacterized protein.
   
  
 0.818
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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