LOC113027455 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113027455

Parathyroid hormone-like hormone b. (166 aa)

Predicted Functional Partners:

pth1r

0.911

LOC113019353

0.909

pth2r

0.869

kpnb1

0.860

calcrl

0.703

calcr

0.703

vipr2

0.701

ENSACLP00000010190

0.701

LOC113016673

0.701

ENSACLP00000016961

0.701

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000010190	LOC113027455	ENSACLP00000010190	ENSACLP00000003863	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Parathyroid hormone-like hormone b.	0.701
ENSACLP00000016961	LOC113027455	ENSACLP00000016961	ENSACLP00000003863	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Parathyroid hormone-like hormone b.	0.701
ENSACLP00000016961	vipr2	ENSACLP00000016961	ENSACLP00000000559	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.532
LOC113016673	LOC113019353	ENSACLP00000016148	ENSACLP00000015492	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Parathyroid hormone 1 receptor b; Belongs to the G-protein coupled receptor 2 family.	0.471
LOC113016673	LOC113027455	ENSACLP00000016148	ENSACLP00000003863	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Parathyroid hormone-like hormone b.	0.701
LOC113016673	calcr	ENSACLP00000016148	ENSACLP00000034449	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Calcitonin receptor; Belongs to the G-protein coupled receptor 2 family.	0.828
LOC113016673	calcrl	ENSACLP00000016148	ENSACLP00000005519	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Calcitonin receptor-like a; Belongs to the G-protein coupled receptor 2 family.	0.849
LOC113016673	pth1r	ENSACLP00000016148	ENSACLP00000025058	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Parathyroid hormone 1 receptor a; Belongs to the G-protein coupled receptor 2 family.	0.466
LOC113016673	pth2r	ENSACLP00000016148	ENSACLP00000011339	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	Parathyroid hormone 2 receptor; Belongs to the G-protein coupled receptor 2 family.	0.441
LOC113019353	LOC113016673	ENSACLP00000015492	ENSACLP00000016148	Parathyroid hormone 1 receptor b; Belongs to the G-protein coupled receptor 2 family.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.471
LOC113019353	LOC113027455	ENSACLP00000015492	ENSACLP00000003863	Parathyroid hormone 1 receptor b; Belongs to the G-protein coupled receptor 2 family.	Parathyroid hormone-like hormone b.	0.909
LOC113019353	calcr	ENSACLP00000015492	ENSACLP00000034449	Parathyroid hormone 1 receptor b; Belongs to the G-protein coupled receptor 2 family.	Calcitonin receptor; Belongs to the G-protein coupled receptor 2 family.	0.444
LOC113019353	calcrl	ENSACLP00000015492	ENSACLP00000005519	Parathyroid hormone 1 receptor b; Belongs to the G-protein coupled receptor 2 family.	Calcitonin receptor-like a; Belongs to the G-protein coupled receptor 2 family.	0.444
LOC113019353	pth1r	ENSACLP00000015492	ENSACLP00000025058	Parathyroid hormone 1 receptor b; Belongs to the G-protein coupled receptor 2 family.	Parathyroid hormone 1 receptor a; Belongs to the G-protein coupled receptor 2 family.	0.857
LOC113027455	ENSACLP00000010190	ENSACLP00000003863	ENSACLP00000010190	Parathyroid hormone-like hormone b.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.701
LOC113027455	ENSACLP00000016961	ENSACLP00000003863	ENSACLP00000016961	Parathyroid hormone-like hormone b.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.701
LOC113027455	LOC113016673	ENSACLP00000003863	ENSACLP00000016148	Parathyroid hormone-like hormone b.	Uncharacterized protein; Belongs to the G-protein coupled receptor 2 family.	0.701
LOC113027455	LOC113019353	ENSACLP00000003863	ENSACLP00000015492	Parathyroid hormone-like hormone b.	Parathyroid hormone 1 receptor b; Belongs to the G-protein coupled receptor 2 family.	0.909
LOC113027455	calcr	ENSACLP00000003863	ENSACLP00000034449	Parathyroid hormone-like hormone b.	Calcitonin receptor; Belongs to the G-protein coupled receptor 2 family.	0.703
LOC113027455	calcrl	ENSACLP00000003863	ENSACLP00000005519	Parathyroid hormone-like hormone b.	Calcitonin receptor-like a; Belongs to the G-protein coupled receptor 2 family.	0.703