STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc38Leucine rich repeat containing 38b. (291 aa)    
Predicted Functional Partners:
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.714
asb16
Ankyrin repeat and SOCS box containing 16.
    
 0.681
lrrc20
Leucine rich repeat containing 20.
      
 0.645
LOC113027643
Ankyrin repeat and SOCS box-containing 12a.
    
 0.613
ENSACLP00000030049
Zgc:153738.
    
 
 0.608
asb8
Ankyrin repeat and SOCS box containing 8.
    
 0.574
LOC113010089
Vav 3 guanine nucleotide exchange factor b.
    
  0.572
ntng1
Netrin g1a.
    
  0.572
LOC113014882
Leucine rich repeat containing 14B.
      
 0.564
asb5
Ankyrin repeat and SOCS box containing 5a.
    
 0.563
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.