Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003907RAB2A, member RAS oncogene family. (189 aa)    
Predicted Functional Partners:
LOC113033143
Uncharacterized protein.
   
  0.968
LOC113025713
Uncharacterized protein.
   
  0.968
blzf1
Basic leucine zipper nuclear factor 1.
    
 0.938
trip11
Thyroid hormone receptor interactor 11.
   
 0.904
vps39
VPS39 subunit of HOPS complex.
    
 
 0.897
LOC113022863
RAB7a, member RAS oncogene family.
   
  0.895
LOC113022527
Uncharacterized protein.
   
  0.895
LOC113022528
RAB7A, member RAS oncogene family.
   
  0.895
tbc1d1
TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.
    
 0.889
ENSACLP00000039535
TBC1 domain family, member 4.
    
 0.889
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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