STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003907RAB2A, member RAS oncogene family. (189 aa)    
Predicted Functional Partners:
LOC113033143
Uncharacterized protein.
  
 
0.885
ENSACLP00000012866
Uncharacterized protein.
    
 0.885
ENSACLP00000012873
SH3 domain-containing protein.
    
 0.885
ENSACLP00000014175
Intersectin 2b.
    
 0.885
LOC113025713
Uncharacterized protein.
  
 
0.885
blzf1
Basic leucine zipper nuclear factor 1.
    
 0.885
NUP54
Nucleoporin 54.
   
 0.865
tbc1d1
TBC1 (tre-2/USP6, BUB2, cdc16) domain family, member 1.
    
 0.862
ENSACLP00000039535
TBC1 domain family, member 4.
    
 0.862
ENSACLP00000039544
PID domain-containing protein.
    
 0.862
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.