Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113035437Reticulon. (993 aa)    
Predicted Functional Partners:
LOC113036345
Beta-secretase 2; Belongs to the peptidase A1 family.
    
 0.838
bace1
Beta-secretase 1; Belongs to the peptidase A1 family.
    
 0.838
snx15
Sorting nexin 15.
    
   0.801
rtn4r
Reticulon 4 receptor.
    
 0.724
LOC113022889
Activity-dependent neuroprotector homeobox a.
   
 0.713
arl6ip5
PRA1 family protein.
    
 
 0.708
LOC113018480
Leucine rich repeat and Ig domain containing 1b.
    
 0.702
LOC113026431
Leucine rich repeat and Ig domain containing 1a.
    
 0.702
LOC113030681
LRRNT domain-containing protein.
    
 0.697
omg
Oligodendrocyte myelin glycoprotein b.
    
 0.697
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.