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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
frem2FRAS1 related extracellular matrix 2a. (3127 aa)    
Predicted Functional Partners:
frem1
Fras1 related extracellular matrix 1a.
  
0.895
fau
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
  0.880
ENSACLP00000030575
Fras1 related extracellular matrix 1b.
  
0.880
npnt
Nephronectin a.
    
  0.871
ENSACLP00000001877
Fraser extracellular matrix complex subunit 1.
   
0.861
LOC113010138
Integrin beta; Belongs to the integrin beta chain family.
    
 0.861
itgb1
Integrin beta; Belongs to the integrin beta chain family.
    
 0.861
ENSACLP00000016233
Integrin beta; Belongs to the integrin beta chain family.
    
 0.848
LOC113035766
FRAS1 related extracellular matrix 2b.
  
  
 
0.848
ENSACLP00000019549
Uncharacterized protein.
    
 0.847
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.