Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
mindy2MINDY lysine 48 deubiquitinase 2. (669 aa)    
Predicted Functional Partners:
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 
 0.810
suv39h1
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
     
  0.800
RPS27A
Ribosomal protein S27a.
    
   0.799
ENSACLP00000009605
Ubiquitin B.
    
   0.786
LOC113030103
Uncharacterized protein.
    
   0.786
setd4
SET domain containing 4.
    
 0.774
setd3
Protein-histidine N-methyltransferase.
    
 0.774
mmut
Methylmalonyl CoA mutase.
    
 0.774
LOC113011270
Ring finger protein 126.
    
  0.654
RNF126
Ring finger protein 126.
    
  0.654
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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