STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000003927MyTH4 domain-containing protein. (132 aa)    
Predicted Functional Partners:
ENSACLP00000018120
FERM domain-containing protein.
 
     0.928
ENSACLP00000005618
Usher syndrome 1C.
   
 0.713
ENSACLP00000031846
Usher syndrome 1Gb (autosomal recessive).
   
 0.706
LOC113020683
Usher syndrome 1Ga (autosomal recessive).
   
 0.706
LOC113020803
Ankyrin repeat and sterile alpha motif domain containing 4B.
   
 0.706
ENSACLP00000026819
PDZ domain-containing protein.
    
 0.676
whrn
Whirlin a.
    
 0.676
ENSACLP00000006413
DCC netrin 1 receptor.
    
  0.655
ENSACLP00000019899
Neogenin 1b.
    
  0.655
MYL12B
Myosin light chain 12B.
    
 0.628
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.