STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113010171Transcription factor 3a. (668 aa)    
Predicted Functional Partners:
ctnnb1
Catenin (cadherin-associated protein), beta 1.
    
 0.962
LOC113024054
BHLH domain-containing protein.
    
 0.898
ENSACLP00000004302
BHLH domain-containing protein.
    
 0.880
LOC113010009
T-cell acute lymphocytic leukemia 1.
    
 0.880
lmo2
LIM domain only 2 (rhombotin-like 1).
    
 0.860
ENSACLP00000001517
Achaete-scute family bHLH transcription factor 1b.
   
 0.843
ENSACLP00000024384
Achaete-scute family bHLH transcription factor 1a.
   
 0.843
myog
Myogenin.
   
 0.826
ENSACLP00000029906
Inhibitor of DNA binding 1, HLH protein.
    
 
 0.825
myod1
Myogenic factor.
    
 0.810
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.