STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c5h1orf158Si:ch211-226m7.4. (223 aa)    
Predicted Functional Partners:
ENSACLP00000017156
WD repeat domain 90.
    
   0.918
efhb
EF-hand domain family, member B.
   
   0.888
c20h1orf194
Uncharacterized protein.
   
   0.868
ENSACLP00000008758
Cilia and flagella associated protein 126.
   
   0.865
LOC113026032
Sperm associated antigen 8.
    
   0.856
cfap52
Cilia and flagella associated protein 52.
   
 
 0.784
ENSACLP00000021365
Si:dkeyp-46h3.1.
   
   0.779
efhc1
EF-hand domain (C-terminal) containing 1.
   
   0.779
efhc2
EF-hand domain (C-terminal) containing 2.
   
   0.778
tekt2
Tektin 2 (testicular).
   
   0.773
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.