STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ldhdLactate dehydrogenase D. (496 aa)    
Predicted Functional Partners:
LOC113030206
Malate synthase-like.
  
 
 0.959
LOC113026538
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 0.940
LOC113027040
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 0.928
LOC113006361
L-lactate dehydrogenase; Belongs to the LDH/MDH superfamily.
  
 0.928
phgdh
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.922
ENSACLP00000016277
Hydroxyacid oxidase (glycolate oxidase) 1.
  
 0.919
hao2
Hydroxyacid oxidase 2 (long chain).
  
 0.915
ENSACLP00000038481
Uncharacterized protein.
  
 0.915
LOC113015954
Serine--pyruvate aminotransferase.
  
 
 0.909
LOC113009972
Serine--pyruvate aminotransferase.
  
 
 0.909
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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