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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000004008Down syndrome cell adhesion molecule b. (2021 aa)    
Predicted Functional Partners:
ENSACLP00000006413
DCC netrin 1 receptor.
   
0.656
ENSACLP00000019899
Neogenin 1b.
   
0.656
LOC113018723
Netrin 5.
   
 0.620
NTN1
Netrin 1.
   
 0.620
LOC113028454
Netrin 2.
   
 0.620
LOC113021247
Netrin 1b.
   
 0.620
LOC113025216
Immunoglobulin superfamily, DCC subclass, member 4.
    
0.587
PAK2
Non-specific serine/threonine protein kinase.
   
 0.526
pak2
Non-specific serine/threonine protein kinase.
   
 0.526
pak1
Non-specific serine/threonine protein kinase.
   
 0.526
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.