STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkbh5AlkB homolog 5, RNA demethylase. (357 aa)    
Predicted Functional Partners:
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.850
mettl14
Methyltransferase like 14; Belongs to the MT-A70-like family.
   
  
 0.603
YTHDC2
YTH domain containing 2.
     
 0.595
wtap
WT1 associated protein.
   
  
 0.590
ddx46
DEAD (Asp-Glu-Ala-Asp) box polypeptide 46.
     
 0.577
ENSACLP00000026406
AlkB homolog 1, histone H2A dioxygenase.
      
 0.577
ythdc1
YTH domain containing 1.
      
 0.577
YTHDF1
YTH N6-methyladenosine RNA binding protein 1.
      
 0.577
ENSACLP00000001671
Afadin, adherens junction formation factor a.
    
  0.574
ENSACLP00000003584
Uncharacterized protein.
    
  0.574
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.