Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
trim54Tripartite motif containing 54. (363 aa)    
Predicted Functional Partners:
ENSACLP00000012944
Tripartite motif containing 101.
     
  0.872
ENSACLP00000025027
Uncharacterized protein.
     
  0.869
trim55
Tripartite motif containing 55b.
     
  0.869
sqstm1
Sequestosome 1.
    
 0.674
nkain2
Sodium/potassium transporting ATPase interacting 2.
      
 0.668
nkain4
Sodium/potassium transporting ATPase interacting 4.
      
 0.663
trim23
Tripartite motif containing 23.
    
 
 0.642
bhlhe22
Basic helix-loop-helix family, member e22.
      
 0.639
zdhhc22
Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.
    
   0.580
LOC113037547
Uridine-cytidine kinase; Belongs to the uridine kinase family.
    
 
 0.572
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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