STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndufaf6NADH:ubiquinone oxidoreductase complex assembly factor 6. (331 aa)    
Predicted Functional Partners:
ndufaf5
NADH:ubiquinone oxidoreductase complex assembly factor 5.
   
 0.963
retsat
Retinol saturase (all-trans-retinol 13,14-reductase).
  
 
 0.954
LOC113021350
Uncharacterized protein.
  
 
 0.954
pyroxd2
Pyridine nucleotide-disulphide oxidoreductase domain 2.
  
 
 0.954
LOC113028182
Si:ch1073-13h15.3.
  
 
 0.954
idi1
Isopentenyl-diphosphate delta isomerase 1.
  
 
 0.949
lss
Terpene cyclase/mutase family member; Belongs to the terpene cyclase/mutase family.
  
 
 0.944
ERG28
Ergosterol biosynthesis 28 homolog.
   
 
 0.938
ENSACLP00000007618
Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
    
 0.905
fnta
Farnesyltransferase, CAAX box, alpha.
     
 0.889
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.