STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TATDN3TatD DNase domain containing 3. (270 aa)    
Predicted Functional Partners:
ENDOV
Endonuclease V.
    
  0.566
urod
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
    
  0.566
ENSACLP00000006893
Tyrosine--tRNA ligase.
  
 
 0.510
KATNAL2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
     
 0.510
mblac1
Metallo-beta-lactamase domain containing 1.
      
 0.477
ssbp1
Single-stranded DNA binding protein 1.
  
    0.474
skap2
Src kinase associated phosphoprotein 2.
      
 0.459
bend7
Si:ch211-220f12.4.
      
 0.452
ENSACLP00000040048
Otolin 1a.
      
 0.451
rps6kc1
Ribosomal protein S6 kinase polypeptide 1.
      
 0.450
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.