STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znrf1Zinc and ring finger 1. (217 aa)    
Predicted Functional Partners:
LOC113009238
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.903
LOC113026979
Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.903
vgll4
Vestigial-like family member 4b.
      
 0.535
klhl22
Kelch-like family member 22.
      
 0.534
ENSACLP00000018605
Ring finger protein 152.
      
 0.528
ncf4
Neutrophil cytosolic factor 4.
      
 0.519
atg7
ATG7 autophagy related 7 homolog (S. cerevisiae).
     
 0.496
uba3
Ubiquitin-like modifier activating enzyme 3.
     
 0.496
ENSACLP00000040931
Ubiquitin-like modifier activating enzyme 5.
     
 0.496
ENSACLP00000009605
Ubiquitin B.
   
  0.495
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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