Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znrf1Zinc and ring finger 1. (217 aa)    
Predicted Functional Partners:
LOC113009238
UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.905
LOC113026979
Ubiquitin-conjugating enzyme E2Nb; Belongs to the ubiquitin-conjugating enzyme family.
    
 
 0.905
ENSACLP00000009605
Ubiquitin B.
    
  0.775
LOC113030103
Uncharacterized protein.
    
  0.775
ENSACLP00000021866
Allantoicase.
      
 0.723
aqr
Aquarius intron-binding spliceosomal factor.
      
 0.712
bcl3
BCL3 transcription coactivator.
    
 
 0.711
cish
Uncharacterized protein.
      
 0.698
CLEC3A
C-type lectin domain family 3 member A.
      
 0.696
vgll4
Vestigial-like family member 4b.
      
 0.696
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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