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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000004076Nucleosome assembly protein 1-like 4a; Belongs to the nucleosome assembly protein (NAP) family. (360 aa)    
Predicted Functional Partners:
ENSACLP00000029283
Importin 9.
   
 
 0.904
rps6
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.903
H2AZ1
Histone H2A; Belongs to the histone H2A family.
   
 
 0.890
LOC113033615
Histone H2A; Belongs to the histone H2A family.
   
 
 0.890
ENSACLP00000002419
Ribosomal protein L39.
   
 
 0.860
sdad1
Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.
    
 
 0.858
ENSACLP00000024683
Nucleosome assembly protein 1-like 1; Belongs to the nucleosome assembly protein (NAP) family.
  
 
0.760
UBE2O
Ubiquitin conjugating enzyme E2 O.
    
 
 0.759
LOC113035099
Core histone macro-H2A; Variant histone H2A which replaces conventional H2A in a subset of nucleosomes.
    
 
 0.682
LOC113030349
H2A histone family, member Y; Belongs to the histone H2A family.
    
 
 0.682
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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