Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000004083WD repeat and FYVE domain containing 3. (3521 aa)    
Predicted Functional Partners:
sqstm1
Sequestosome 1.
   
 0.995
map1lc3a
Microtubule-associated protein 1 light chain 3 alpha.
    
 0.977
map1lc3b
Microtubule-associated protein 1 light chain 3 beta.
    
 0.977
gabarap
GABA(A) receptor-associated protein b.
    
 0.954
ENSACLP00000008630
GABA(A) receptor-associated protein like 2.
    
 0.954
LOC113027204
GABA type A receptor associated protein like 2.
    
 0.954
ENSACLP00000003628
Microtubule-associated protein 1 light chain 3 gamma.
    
 0.951
ENSACLP00000015298
NBR1 autophagy cargo receptor b.
   
 0.939
LOC113028111
NBR1 autophagy cargo receptor a.
   
 0.939
ENSACLP00000035197
SKICH domain-containing protein.
     
 0.907
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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