STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000004083WD repeat and FYVE domain containing 3. (3521 aa)    
Predicted Functional Partners:
sqstm1
Sequestosome 1.
   
 
 0.857
smpd2
Sphingomyelin phosphodiesterase 2b, neutral membrane (neutral sphingomyelinase).
     
 0.837
gabarap
GABA(A) receptor-associated protein b.
    
 
 0.752
ENSACLP00000008630
GABA(A) receptor-associated protein like 2.
    
 
 0.752
LOC113027204
GABA type A receptor associated protein like 2.
    
 
 0.752
LOC113026972
Pleckstrin homology domain containing, family G (with RhoGef domain) member 7.
    
 0.716
LOC113026972-2
Pleckstrin homology domain-containing family G member 7-like.
    
 0.716
rpia
Ribose 5-phosphate isomerase A (ribose 5-phosphate epimerase).
     
 0.670
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
    
 
 0.666
ENSACLP00000003628
Microtubule-associated protein 1 light chain 3 gamma.
    
 
 0.664
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.