STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113036070Uncharacterized protein. (554 aa)    
Predicted Functional Partners:
nectin1
Nectin cell adhesion molecule 1b.
    
0.960
ENSACLP00000001671
Afadin, adherens junction formation factor a.
    
 0.908
ENSACLP00000003584
Uncharacterized protein.
    
 0.908
LOC113016974
Uncharacterized protein.
    
 
0.879
LOC113011389
Par-3 family cell polarity regulator alpha, b.
   
  0.877
PARD3
Par-3 family cell polarity regulator.
   
  0.877
LOC113010544
Nectin cell adhesion molecule 4b.
    
 
0.876
LOC113014137
PVR cell adhesion molecule related 2 like.
    
 
0.876
LOC113032396
Si:ch73-22o12.1.
    
 
0.876
LOC113030735
Nectin cell adhesion molecule 3b.
  
  
 
0.850
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.