Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113024464Smith-Magenis syndrome chromosome region, candidate 8b. (911 aa)    
Predicted Functional Partners:
ENSACLP00000032760
Zgc:100846.
    
 0.995
wdr41
WD repeat domain 41.
    
 0.992
RAB39B
RAB39B, member RAS oncogene family.
    
 0.949
ENSACLP00000022786
Unc-51 like autophagy activating kinase 1a.
    
 0.945
LOC113025845
Unc-51 like autophagy activating kinase 1.
    
 0.945
LOC113021135
Smith-Magenis syndrome chromosome region, candidate 8a.
  
  
 
0.943
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.935
tbk1
TANK-binding kinase 1.
    
 0.931
ikbke
Inhibitor of nuclear factor kappa B kinase subunit epsilon.
   
 0.894
ENSACLP00000003132
RAB8A, member RAS oncogene family.
    
 0.886
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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