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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ormdl1ORM1-like protein; Negative regulator of sphingolipid synthesis. (153 aa)    
Predicted Functional Partners:
sptlc1
Serine palmitoyltransferase, long chain base subunit 1.
    
 
 0.908
sptssa
Serine palmitoyltransferase, small subunit A.
    
 
 0.869
LOC113012162
Serine palmitoyltransferase, long chain base subunit 2a.
    
 
 0.707
sptlc2
Serine palmitoyltransferase, long chain base subunit 2b.
    
 
 0.707
ENSACLP00000036653
Isthmin 2b.
    
 
 0.707
sptlc3
Serine palmitoyltransferase, long chain base subunit 3.
    
 
 0.707
ism1
Isthmin 1.
    
 
 0.707
ENSACLP00000026412
Aminolevulinate, delta-, synthase 1.
    
 
 0.651
gcat
Glycine C-acetyltransferase.
    
 
 0.651
LOC113013310
5-aminolevulinate synthase.
    
 
 0.651
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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