Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mrpl15Mitochondrial ribosomal protein L15. (296 aa)    
Predicted Functional Partners:
mrpl9
Mitochondrial ribosomal protein L9.
  
 0.998
mrpl13
Mitochondrial ribosomal protein L13.
  
 0.998
mrpl12
Mitochondrial ribosomal protein L12.
  
 0.998
mrpl35
Mitochondrial ribosomal protein L35.
   
 0.996
mrpl17
Mitochondrial ribosomal protein L17; Belongs to the bacterial ribosomal protein bL17 family.
  
 0.996
mrpl19
Mitochondrial ribosomal protein L19.
   
 0.995
ENSACLP00000028949
Mitochondrial ribosomal protein L47.
   
 0.994
mrpl32
Mitochondrial ribosomal protein L32.
  
 0.994
ENSACLP00000035858
Mitochondrial ribosomal protein L16; Belongs to the universal ribosomal protein uL16 family.
  
 0.994
LOC113027054
Mitochondrial ribosomal protein L23.
   
 0.993
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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