LOC113010065 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113010065

Uncharacterized protein. (239 aa)

Predicted Functional Partners:

mta3

0.916

mta1

0.916

mta2

0.916

LOC113027513

0.893

LOC113011815

0.893

LOC113014472

0.893

LOC113026104

0.871

LOC113016908

0.871

kdm1a

0.843

ENSACLP00000004606

0.839

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000004606	LOC113010065	ENSACLP00000004606	ENSACLP00000004159	Chromodomain helicase DNA binding protein 5.	Uncharacterized protein.	0.839
ENSACLP00000004606	LOC113011815	ENSACLP00000004606	ENSACLP00000006069	Chromodomain helicase DNA binding protein 5.	Retinoblastoma binding protein 4.	0.858
ENSACLP00000004606	LOC113014472	ENSACLP00000004606	ENSACLP00000006543	Chromodomain helicase DNA binding protein 5.	WD_REPEATS_REGION domain-containing protein.	0.858
ENSACLP00000004606	LOC113016908	ENSACLP00000004606	ENSACLP00000034531	Chromodomain helicase DNA binding protein 5.	Methyl-CpG binding domain protein 3a.	0.839
ENSACLP00000004606	LOC113026104	ENSACLP00000004606	ENSACLP00000006712	Chromodomain helicase DNA binding protein 5.	Methyl-CpG binding domain protein 2.	0.839
ENSACLP00000004606	LOC113027513	ENSACLP00000004606	ENSACLP00000000117	Chromodomain helicase DNA binding protein 5.	Retinoblastoma binding protein 4, like.	0.858
ENSACLP00000004606	kdm1a	ENSACLP00000004606	ENSACLP00000022320	Chromodomain helicase DNA binding protein 5.	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	0.901
ENSACLP00000004606	mta1	ENSACLP00000004606	ENSACLP00000011272	Chromodomain helicase DNA binding protein 5.	Metastasis associated 1.	0.928
ENSACLP00000004606	mta2	ENSACLP00000004606	ENSACLP00000022559	Chromodomain helicase DNA binding protein 5.	Metastasis associated 1 family, member 2.	0.928
ENSACLP00000004606	mta3	ENSACLP00000004606	ENSACLP00000002742	Chromodomain helicase DNA binding protein 5.	Metastasis associated 1 family, member 3.	0.928
LOC113010065	ENSACLP00000004606	ENSACLP00000004159	ENSACLP00000004606	Uncharacterized protein.	Chromodomain helicase DNA binding protein 5.	0.839
LOC113010065	LOC113011815	ENSACLP00000004159	ENSACLP00000006069	Uncharacterized protein.	Retinoblastoma binding protein 4.	0.893
LOC113010065	LOC113014472	ENSACLP00000004159	ENSACLP00000006543	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.893
LOC113010065	LOC113016908	ENSACLP00000004159	ENSACLP00000034531	Uncharacterized protein.	Methyl-CpG binding domain protein 3a.	0.871
LOC113010065	LOC113026104	ENSACLP00000004159	ENSACLP00000006712	Uncharacterized protein.	Methyl-CpG binding domain protein 2.	0.871
LOC113010065	LOC113027513	ENSACLP00000004159	ENSACLP00000000117	Uncharacterized protein.	Retinoblastoma binding protein 4, like.	0.893
LOC113010065	kdm1a	ENSACLP00000004159	ENSACLP00000022320	Uncharacterized protein.	Lysine-specific histone demethylase; Histone demethylase that demethylates both 'Lys-4' (H3K4me) and 'Lys-9' (H3K9me) of histone H3, thereby acting as a coactivator or a corepressor, depending on the context. Acts by oxidizing the substrate by FAD to generate the corresponding imine that is subsequently hydrolyzed. Acts as a corepressor by mediating demethylation of H3K4me, a specific tag for epigenetic transcriptional activation. Demethylates both mono- (H3K4me1) and di-methylated (H3K4me2) H3K4me; Belongs to the flavin monoamine oxidase family.	0.843
LOC113010065	mta1	ENSACLP00000004159	ENSACLP00000011272	Uncharacterized protein.	Metastasis associated 1.	0.916
LOC113010065	mta2	ENSACLP00000004159	ENSACLP00000022559	Uncharacterized protein.	Metastasis associated 1 family, member 2.	0.916
LOC113010065	mta3	ENSACLP00000004159	ENSACLP00000002742	Uncharacterized protein.	Metastasis associated 1 family, member 3.	0.916