Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113024466Pentatricopeptide repeat domain 1. (708 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
   
 
 0.980
mterf3
Mitochondrial transcription termination factor 3.
   
 
 0.942
ENSACLP00000019085
DEAD (Asp-Glu-Ala-Asp) box polypeptide 28.
   
 
 0.939
ngrn
Neugrin, neurite outgrowth associated.
    
 
 0.908
tubgcp5
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
    
 0.885
ENSACLP00000010694
Gamma-tubulin complex component; Gamma-tubulin complex is necessary for microtubule nucleation at the centrosome; Belongs to the TUBGCP family.
    
 0.879
mccc2
Methylcrotonoyl-CoA carboxylase 2 (beta).
   
 0.874
LOC113008790
Si:ch211-198n5.11.
   
 0.874
trub2
TruB pseudouridine (psi) synthase family member 2.
   
 
 0.857
pccb
Propionyl-CoA carboxylase subunit beta.
   
 0.840
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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