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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dcaf6Ddb1 and cul4 associated factor 6. (966 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 0.980
cul4b
Cullin 4B; Belongs to the cullin family.
   
 0.872
ENSACLP00000035328
Cullin 4A; Belongs to the cullin family.
   
 0.872
ddb2
Damage-specific DNA binding protein 2.
    
 0.868
dcaf4
WD repeat domain 21.
     
 0.840
dcaf5
Ddb1 and cul4 associated factor 5.
   
 
0.832
DDA1
DET1 and DDB1 associated 1.
    
 0.757
ENSACLP00000017972
DET1 and DDB1 associated 1.
    
 0.757
dcaf11
DDB1- and CUL4-associated factor 11; May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex; Belongs to the WD repeat LEC14B family.
    
 0.750
rbx1
Ring-box 1, E3 ubiquitin protein ligase.
    
 0.745
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.