Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dcaf6Ddb1 and cul4 associated factor 6. (966 aa)    
Predicted Functional Partners:
ddb1
Damage-specific DNA binding protein 1.
    
 0.995
dcaf4
WD repeat domain 21.
     
 0.958
cul4b
Cullin 4B; Belongs to the cullin family.
    
 0.957
ENSACLP00000035328
Cullin 4A; Belongs to the cullin family.
    
 0.957
dcaf5
Ddb1 and cul4 associated factor 5.
     
0.926
DDA1
DET1 and DDB1 associated 1.
    
 0.915
ENSACLP00000017972
DET1 and DDB1 associated 1.
    
 0.915
ddb2
Damage-specific DNA binding protein 2.
    
 0.913
ENSACLP00000015414
Uncharacterized protein.
    
 0.879
trpc4ap
Transient receptor potential cation channel, subfamily C, member 4 associated protein a.
    
 0.879
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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