Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ldb3Uncharacterized protein. (585 aa)    
Predicted Functional Partners:
pdlim7
PDZ and LIM domain 7.
   
 
0.943
LOC113025740
PDZ and LIM domain 5b.
   
 
0.937
ENSACLP00000028972
PDZ and LIM domain 5a.
   
 
0.937
LOC113023901
Uncharacterized protein.
   
  0.904
suox
Sulfite oxidase.
     
  0.870
pdlim1
PDZ and LIM domain 1 (elfin).
   
 
0.680
pdlim3
PDZ and LIM domain 3a.
   
 
0.680
lpxn
Leupaxin.
    
 
0.662
LOC113033762
PDZ and LIM domain 2 (mystique).
    
 
0.662
pdlim4
PDZ and LIM domain 4.
    
 
0.662
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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