STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113006342Uncharacterized protein. (4919 aa)    
Predicted Functional Partners:
LOC113030206
Malate synthase-like.
   
 
 0.890
vrk1
VRK serine/threonine kinase 1; Belongs to the protein kinase superfamily.
    
 0.735
LOC113035239
VRK serine/threonine kinase 2.
    
 0.735
arl1
ADP-ribosylation factor-like 1; Belongs to the small GTPase superfamily. Arf family.
    
  0.727
ENSACLP00000033141
Uncharacterized protein.
    
  0.727
ENSACLP00000033188
Uncharacterized protein.
    
  0.727
LOC113036096
Protein phosphatase 2, regulatory subunit A, beta b.
    
  0.722
ENSACLP00000019329
Uncharacterized protein.
    
  0.710
ENSACLP00000010589
Tumor protein p53 binding protein, 1.
    
 0.707
ENSACLP00000026842
Centromere protein J.
    
 
 0.706
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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