LOC113006342 protein (Astatotilapia calliptera)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

LOC113006342

Uncharacterized protein. (4919 aa)

Predicted Functional Partners:

LOC113030206

0.864

ENSACLP00000026842

0.854

ENSACLP00000010589

0.788

vrk1

0.757

LOC113035239

0.757

LOC113036096

0.753

ENSACLP00000015298

0.747

LOC113028111

0.747

ENSACLP00000032141

0.711

reep3

0.704

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000010589	ENSACLP00000032141	ENSACLP00000010589	ENSACLP00000032141	Tumor protein p53 binding protein, 1.	Polo-like kinase 4 (Drosophila).	0.811
ENSACLP00000010589	LOC113006342	ENSACLP00000010589	ENSACLP00000004201	Tumor protein p53 binding protein, 1.	Uncharacterized protein.	0.788
ENSACLP00000015298	LOC113006342	ENSACLP00000015298	ENSACLP00000004201	NBR1 autophagy cargo receptor b.	Uncharacterized protein.	0.747
ENSACLP00000015298	LOC113028111	ENSACLP00000015298	ENSACLP00000036933	NBR1 autophagy cargo receptor b.	NBR1 autophagy cargo receptor a.	0.982
ENSACLP00000026842	ENSACLP00000032141	ENSACLP00000026842	ENSACLP00000032141	Centromere protein J.	Polo-like kinase 4 (Drosophila).	0.981
ENSACLP00000026842	LOC113006342	ENSACLP00000026842	ENSACLP00000004201	Centromere protein J.	Uncharacterized protein.	0.854
ENSACLP00000026842	LOC113035239	ENSACLP00000026842	ENSACLP00000020394	Centromere protein J.	VRK serine/threonine kinase 2.	0.420
ENSACLP00000026842	vrk1	ENSACLP00000026842	ENSACLP00000006989	Centromere protein J.	VRK serine/threonine kinase 1; Belongs to the protein kinase superfamily.	0.420
ENSACLP00000032141	ENSACLP00000010589	ENSACLP00000032141	ENSACLP00000010589	Polo-like kinase 4 (Drosophila).	Tumor protein p53 binding protein, 1.	0.811
ENSACLP00000032141	ENSACLP00000026842	ENSACLP00000032141	ENSACLP00000026842	Polo-like kinase 4 (Drosophila).	Centromere protein J.	0.981
ENSACLP00000032141	LOC113006342	ENSACLP00000032141	ENSACLP00000004201	Polo-like kinase 4 (Drosophila).	Uncharacterized protein.	0.711
ENSACLP00000032141	LOC113035239	ENSACLP00000032141	ENSACLP00000020394	Polo-like kinase 4 (Drosophila).	VRK serine/threonine kinase 2.	0.530
ENSACLP00000032141	LOC113036096	ENSACLP00000032141	ENSACLP00000027786	Polo-like kinase 4 (Drosophila).	Protein phosphatase 2, regulatory subunit A, beta b.	0.658
ENSACLP00000032141	vrk1	ENSACLP00000032141	ENSACLP00000006989	Polo-like kinase 4 (Drosophila).	VRK serine/threonine kinase 1; Belongs to the protein kinase superfamily.	0.530
LOC113006342	ENSACLP00000010589	ENSACLP00000004201	ENSACLP00000010589	Uncharacterized protein.	Tumor protein p53 binding protein, 1.	0.788
LOC113006342	ENSACLP00000015298	ENSACLP00000004201	ENSACLP00000015298	Uncharacterized protein.	NBR1 autophagy cargo receptor b.	0.747
LOC113006342	ENSACLP00000026842	ENSACLP00000004201	ENSACLP00000026842	Uncharacterized protein.	Centromere protein J.	0.854
LOC113006342	ENSACLP00000032141	ENSACLP00000004201	ENSACLP00000032141	Uncharacterized protein.	Polo-like kinase 4 (Drosophila).	0.711
LOC113006342	LOC113028111	ENSACLP00000004201	ENSACLP00000036933	Uncharacterized protein.	NBR1 autophagy cargo receptor a.	0.747
LOC113006342	LOC113030206	ENSACLP00000004201	ENSACLP00000009612	Uncharacterized protein.	Malate synthase-like.	0.864