STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113026544Ankyrin repeat and SOCS box containing 13b. (289 aa)    
Predicted Functional Partners:
eloc
Elongin C paralog a; Belongs to the SKP1 family.
    
 0.854
asb7
Ankyrin repeat and SOCS box containing 7.
  
 
0.801
LOC113019345
Ubiquitin-like domain-containing protein.
    
 0.746
LOC113020323
Elongin B.
    
 0.746
ENSACLP00000021411
Copper metabolism (Murr1) domain containing 1.
    
  0.713
LOC113036014
CULLIN_2 domain-containing protein; Belongs to the cullin family.
    
 0.711
CUL5
Cullin 5; Belongs to the cullin family.
    
 0.711
commd8
COMM domain containing 8.
    
  0.710
LOC113018914
NEDD8 ubiquitin like modifier.
    
  0.688
ENSACLP00000029713
Ubiquitin-like domain-containing protein.
    
  0.688
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.