Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000004229LisH domain-containing protein. (204 aa)    
Predicted Functional Partners:
LOC113036802
Zgc:112083.
    
 
 0.943
cramp1
Cramped chromatin regulator homolog 1.
    
 
 0.928
hinfp
Histone H4 transcription factor.
    
 
 0.870
ccne1
Cyclin E1; Belongs to the cyclin family.
    
 
 0.807
LOC113032810
Cyclin E2; Belongs to the cyclin family.
    
 
 0.807
ENSACLP00000029588
Uncharacterized protein.
   
 
 0.769
LOC113029775
Cytochrome c heme lyase; Links covalently the heme group to the apoprotein of cytochrome c.
    
 
 0.750
LOC113019144
Zinc finger protein 219.
    
  0.745
znf536
Zinc finger protein 536.
    
  0.745
ENSACLP00000007376
Uncharacterized protein.
    
  0.745
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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