ENSACLP00000004270 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

ENSACLP00000004270

Uncharacterized protein. (361 aa)

Predicted Functional Partners:

ENSACLP00000041593

0.927

fancm

0.916

angptl7

0.716

ENSACLP00000037094

0.711

tonsl

0.709

mysm1

0.686

LOC113008023

0.684

LOC113027513

0.665

wdr73

0.665

LOC113011815

0.665

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000004270	ENSACLP00000037094	ENSACLP00000004270	ENSACLP00000037094	Uncharacterized protein.	Im:7152348.	0.711
ENSACLP00000004270	ENSACLP00000041593	ENSACLP00000004270	ENSACLP00000041593	Uncharacterized protein.	Uncharacterized protein.	0.927
ENSACLP00000004270	LOC113008023	ENSACLP00000004270	ENSACLP00000027401	Uncharacterized protein.	BRCA1 associated RING domain 1.	0.684
ENSACLP00000004270	LOC113011815	ENSACLP00000004270	ENSACLP00000006069	Uncharacterized protein.	Retinoblastoma binding protein 4.	0.665
ENSACLP00000004270	LOC113027513	ENSACLP00000004270	ENSACLP00000000117	Uncharacterized protein.	Retinoblastoma binding protein 4, like.	0.665
ENSACLP00000004270	angptl7	ENSACLP00000004270	ENSACLP00000018412	Uncharacterized protein.	Angiopoietin-like 7.	0.716
ENSACLP00000004270	fancm	ENSACLP00000004270	ENSACLP00000023555	Uncharacterized protein.	Uncharacterized protein.	0.916
ENSACLP00000004270	mysm1	ENSACLP00000004270	ENSACLP00000019550	Uncharacterized protein.	Myb-like, SWIRM and MPN domains 1.	0.686
ENSACLP00000004270	tonsl	ENSACLP00000004270	ENSACLP00000025159	Uncharacterized protein.	Tonsoku-like, DNA repair protein.	0.709
ENSACLP00000004270	wdr73	ENSACLP00000004270	ENSACLP00000004178	Uncharacterized protein.	WD repeat domain 73.	0.665
ENSACLP00000037094	ENSACLP00000004270	ENSACLP00000037094	ENSACLP00000004270	Im:7152348.	Uncharacterized protein.	0.711
ENSACLP00000037094	LOC113008023	ENSACLP00000037094	ENSACLP00000027401	Im:7152348.	BRCA1 associated RING domain 1.	0.892
ENSACLP00000037094	fancm	ENSACLP00000037094	ENSACLP00000023555	Im:7152348.	Uncharacterized protein.	0.457
ENSACLP00000037094	mysm1	ENSACLP00000037094	ENSACLP00000019550	Im:7152348.	Myb-like, SWIRM and MPN domains 1.	0.711
ENSACLP00000037094	tonsl	ENSACLP00000037094	ENSACLP00000025159	Im:7152348.	Tonsoku-like, DNA repair protein.	0.594
ENSACLP00000041593	ENSACLP00000004270	ENSACLP00000041593	ENSACLP00000004270	Uncharacterized protein.	Uncharacterized protein.	0.927
ENSACLP00000041593	LOC113008023	ENSACLP00000041593	ENSACLP00000027401	Uncharacterized protein.	BRCA1 associated RING domain 1.	0.471
ENSACLP00000041593	mysm1	ENSACLP00000041593	ENSACLP00000019550	Uncharacterized protein.	Myb-like, SWIRM and MPN domains 1.	0.513
LOC113008023	ENSACLP00000004270	ENSACLP00000027401	ENSACLP00000004270	BRCA1 associated RING domain 1.	Uncharacterized protein.	0.684
LOC113008023	ENSACLP00000037094	ENSACLP00000027401	ENSACLP00000037094	BRCA1 associated RING domain 1.	Im:7152348.	0.892