STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
znf142Zinc finger protein 142. (1679 aa)    
Predicted Functional Partners:
mrps16
Mitochondrial ribosomal protein S16.
   
 0.654
polr3c
RNA polymerase III subunit C3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.625
stk36
Serine/threonine kinase 36 (fused homolog, Drosophila).
    
 0.613
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.589
LOC113008023
BRCA1 associated RING domain 1.
    
  0.585
ak9
Adenylate kinase 9.
    
  0.584
YTHDC2
YTH domain containing 2.
    
  0.555
sgk3
Non-specific serine/threonine protein kinase; Belongs to the protein kinase superfamily.
    
  0.530
ambra1
Autophagy/beclin-1 regulator 1b.
   
  0.529
LOC113031405
Cytochrome b5 reductase 4.
    
  0.503
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.