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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113031076Cone-rod homeobox. (295 aa)    
Predicted Functional Partners:
RARG
Retinoic acid receptor gamma.
    
 
 0.815
nr1d1
Nuclear receptor subfamily 1, group d, member 1.
    
 
 0.676
thrb
Thyroid hormone receptor beta.
   
 
 0.675
tnpo3
Transportin 3.
      
 0.632
ENSACLP00000022146
Neural retina leucine zipper.
    
 
 0.549
NR2E3
Nuclear receptor subfamily 2 group E member 3.
   
 
 0.541
LOC113027462
Nuclear receptor subfamily 2, group E, member 3.
   
 
 0.541
neurod1
Neurogenic differentiation factor.
   
  
 0.449
LOC113022596
Retinoic acid receptor, gamma b.
    
 
 0.408
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.