Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113031076Cone-rod homeobox. (295 aa)    
Predicted Functional Partners:
RARG
Retinoic acid receptor gamma.
    
 
 0.861
thrb
Thyroid hormone receptor beta.
   
 
 0.838
nr1d1
Nuclear receptor subfamily 1, group d, member 1.
    
 
 0.829
mmaa
Metabolism of cobalamin associated A.
      
 0.820
tnpo3
Transportin 3.
      
 0.785
ENSACLP00000022146
Neural retina leucine zipper.
    
 
 0.740
LOC113022671
MyoD family inhibitor.
    
   0.725
LOC113012897
Zgc:113363.
    
   0.725
NR2E3
Nuclear receptor subfamily 2 group E member 3.
   
 
 0.721
LOC113027462
Nuclear receptor subfamily 2, group E, member 3.
   
 
 0.721
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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