ENSACLP00000004302 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000004302

BHLH domain-containing protein. (97 aa)

Predicted Functional Partners:

lmo2

0.989

LOC113022894

0.981

LOC113034698

0.941

LOC113023769

0.941

LOC113015873

0.922

ldb2

0.921

lmo3

0.900

LOC113022250

0.900

LOC113022847

0.879

GATA2

0.879

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000004302	GATA2	ENSACLP00000004302	ENSACLP00000036229	BHLH domain-containing protein.	GATA binding protein 2.	0.879
ENSACLP00000004302	LOC113015873	ENSACLP00000004302	ENSACLP00000015302	BHLH domain-containing protein.	Runt-related transcription factor.	0.922
ENSACLP00000004302	LOC113022250	ENSACLP00000004302	ENSACLP00000040186	BHLH domain-containing protein.	LIM domain only 1.	0.900
ENSACLP00000004302	LOC113022847	ENSACLP00000004302	ENSACLP00000027595	BHLH domain-containing protein.	GATA binding protein 2a.	0.879
ENSACLP00000004302	LOC113022894	ENSACLP00000004302	ENSACLP00000031119	BHLH domain-containing protein.	GATA binding protein 1a.	0.981
ENSACLP00000004302	LOC113023769	ENSACLP00000004302	ENSACLP00000028484	BHLH domain-containing protein.	LIM-domain binding 1b.	0.941
ENSACLP00000004302	LOC113034698	ENSACLP00000004302	ENSACLP00000011720	BHLH domain-containing protein.	LIM domain binding 1a.	0.941
ENSACLP00000004302	ldb2	ENSACLP00000004302	ENSACLP00000018470	BHLH domain-containing protein.	LIM domain binding 2a.	0.921
ENSACLP00000004302	lmo2	ENSACLP00000004302	ENSACLP00000010909	BHLH domain-containing protein.	LIM domain only 2 (rhombotin-like 1).	0.989
ENSACLP00000004302	lmo3	ENSACLP00000004302	ENSACLP00000020658	BHLH domain-containing protein.	LIM domain only 3.	0.900
GATA2	ENSACLP00000004302	ENSACLP00000036229	ENSACLP00000004302	GATA binding protein 2.	BHLH domain-containing protein.	0.879
GATA2	LOC113015873	ENSACLP00000036229	ENSACLP00000015302	GATA binding protein 2.	Runt-related transcription factor.	0.873
GATA2	LOC113022250	ENSACLP00000036229	ENSACLP00000040186	GATA binding protein 2.	LIM domain only 1.	0.676
GATA2	LOC113022894	ENSACLP00000036229	ENSACLP00000031119	GATA binding protein 2.	GATA binding protein 1a.	0.600
GATA2	LOC113023769	ENSACLP00000036229	ENSACLP00000028484	GATA binding protein 2.	LIM-domain binding 1b.	0.766
GATA2	LOC113034698	ENSACLP00000036229	ENSACLP00000011720	GATA binding protein 2.	LIM domain binding 1a.	0.766
GATA2	ldb2	ENSACLP00000036229	ENSACLP00000018470	GATA binding protein 2.	LIM domain binding 2a.	0.756
GATA2	lmo2	ENSACLP00000036229	ENSACLP00000010909	GATA binding protein 2.	LIM domain only 2 (rhombotin-like 1).	0.857
GATA2	lmo3	ENSACLP00000036229	ENSACLP00000020658	GATA binding protein 2.	LIM domain only 3.	0.676
LOC113015873	ENSACLP00000004302	ENSACLP00000015302	ENSACLP00000004302	Runt-related transcription factor.	BHLH domain-containing protein.	0.922