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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000004302BHLH domain-containing protein. (97 aa)    
Predicted Functional Partners:
lmo2
LIM domain only 2 (rhombotin-like 1).
   
 0.980
LOC113034698
LIM domain binding 1a.
    
 0.918
LOC113023769
LIM-domain binding 1b.
    
 0.918
ldb2
LIM domain binding 2a.
    
 0.905
LOC113022894
GATA binding protein 1a.
   
 0.904
TCF4
Transcription factor 4.
    
 0.880
LOC113010171
Transcription factor 3a.
    
 0.880
tcf12
Transcription factor 12.
    
 0.880
LOC113016192
Transcription factor 3b.
    
 0.880
LOC113026641
BHLH domain-containing protein.
    
 0.866
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.