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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rmnd5bRequired for meiotic nuclear division 5 homolog B. (391 aa)    
Predicted Functional Partners:
gid8
GID complex subunit 8 homolog b (S. cerevisiae).
    
 
 0.970
ENSACLP00000031178
RAN binding protein 10.
  
 
 0.950
ranbp9
RAN binding protein 9.
  
 
 0.950
LOC113031926
WD repeat domain 26a.
  
 
 0.941
ENSACLP00000012678
WD repeat domain 26b.
  
 
 0.941
SPRYD3
SPRY domain containing 3.
   
 
 0.894
ENSACLP00000023182
SPRY domain containing 3.
   
 
 0.894
armc8
Armadillo repeat containing 8.
    
 
 0.889
ENSACLP00000020087
Muskelin 1, intracellular mediator containing kelch motifs.
    
 
 0.872
GID4
GID complex subunit 4 homolog.
    
 
 0.863
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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