LOC113029763 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113029763

Uncharacterized protein. (2412 aa)

Predicted Functional Partners:

paf1

0.793

ENSACLP00000017650

0.792

CDYL2

0.788

cdyl

0.788

ENSACLP00000021335

0.780

LOC113006874

0.729

LOC113015801

0.729

ENSACLP00000000543

0.721

cinp

0.721

tert

0.704

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDYL2	LOC113029763	ENSACLP00000010456	ENSACLP00000004360	Chromodomain Y like 2.	Uncharacterized protein.	0.788
CDYL2	cdyl	ENSACLP00000010456	ENSACLP00000023442	Chromodomain Y like 2.	Chromodomain protein, Y-like.	0.790
ENSACLP00000000543	ENSACLP00000017650	ENSACLP00000000543	ENSACLP00000017650	CTR9 homolog, Paf1/RNA polymerase II complex component.	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	0.999
ENSACLP00000000543	LOC113029763	ENSACLP00000000543	ENSACLP00000004360	CTR9 homolog, Paf1/RNA polymerase II complex component.	Uncharacterized protein.	0.721
ENSACLP00000000543	paf1	ENSACLP00000000543	ENSACLP00000011260	CTR9 homolog, Paf1/RNA polymerase II complex component.	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.999
ENSACLP00000017650	ENSACLP00000000543	ENSACLP00000017650	ENSACLP00000000543	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	CTR9 homolog, Paf1/RNA polymerase II complex component.	0.999
ENSACLP00000017650	LOC113029763	ENSACLP00000017650	ENSACLP00000004360	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Uncharacterized protein.	0.792
ENSACLP00000017650	cinp	ENSACLP00000017650	ENSACLP00000022876	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	Cyclin-dependent kinase 2 interacting protein.	0.965
ENSACLP00000017650	paf1	ENSACLP00000017650	ENSACLP00000011260	Cell division cycle 73, Paf1/RNA polymerase II complex component, homolog (S. cerevisiae).	PAF1 homolog, Paf1/RNA polymerase II complex component.	0.999
ENSACLP00000021335	LOC113006874	ENSACLP00000021335	ENSACLP00000017282	Protection of telomeres 1 homolog.	Rp1 like 1b.	0.658
ENSACLP00000021335	LOC113015801	ENSACLP00000021335	ENSACLP00000040702	Protection of telomeres 1 homolog.	Rp1 like 1a.	0.658
ENSACLP00000021335	LOC113029763	ENSACLP00000021335	ENSACLP00000004360	Protection of telomeres 1 homolog.	Uncharacterized protein.	0.780
ENSACLP00000021335	tert	ENSACLP00000021335	ENSACLP00000006476	Protection of telomeres 1 homolog.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.981
LOC113006874	ENSACLP00000021335	ENSACLP00000017282	ENSACLP00000021335	Rp1 like 1b.	Protection of telomeres 1 homolog.	0.658
LOC113006874	LOC113029763	ENSACLP00000017282	ENSACLP00000004360	Rp1 like 1b.	Uncharacterized protein.	0.729
LOC113006874	tert	ENSACLP00000017282	ENSACLP00000006476	Rp1 like 1b.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.450
LOC113015801	ENSACLP00000021335	ENSACLP00000040702	ENSACLP00000021335	Rp1 like 1a.	Protection of telomeres 1 homolog.	0.658
LOC113015801	LOC113029763	ENSACLP00000040702	ENSACLP00000004360	Rp1 like 1a.	Uncharacterized protein.	0.729
LOC113015801	tert	ENSACLP00000040702	ENSACLP00000006476	Rp1 like 1a.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.450
LOC113029763	CDYL2	ENSACLP00000004360	ENSACLP00000010456	Uncharacterized protein.	Chromodomain Y like 2.	0.788